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利用单因子和正交设计双重实验法优化鹧鸪茶RAPD-PCR反应体系

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收稿日期: 2011-05-27

  修回日期: 2011-06-27

  网络出版日期: 2011-06-15

基金资助

海南大学校级重点学科专项资金研究课题

Optimization of RAPD-PCR Experimental System in Mallotus oblongifolius (Miq.) Muell.-Arg. Using the Dual Experiments of the Single Factor and the Orthogonal Design

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Received date: 2011-05-27

  Revised date: 2011-06-27

  Online published: 2011-06-15

摘要

为了建立鹧鸪茶RAPD-PCR的优化反应体系,首先通过单因素试验选定其各影响因子比较适宜的浓度范围,再利用正交试验设计方法,对影响鹧鸪茶RAPD-PCR反应的5种因素进行四水平优化试验。并运用SAS软件对试验结果进行了分析,最后确定优化的RAPD-PCR反应体系为:10×Buffer缓冲液2.5 μL+Mg2+ 2.5 mmol/L + dNTPs 0.2 mmol/L + TaqDNA聚合酶1.5 U + S28引物0.48 mmol/L + 80 ng模板,定容至25 μL。PCR扩增程序为:94℃预变性4 min,然后按94℃变性30 s,38℃退火45 s,72℃延伸120 s,进行45个循环,最后72℃延伸10 min;16℃保存。该优化的RAPD-PCR反应体系具有良好的稳定性和重现性,可应用于鹧鸪茶不同居群间亲缘关系和遗传多样性分析。

本文引用格式

李娟玲 刘国民 曹嵩晓 罗轶奇 . 利用单因子和正交设计双重实验法优化鹧鸪茶RAPD-PCR反应体系[J]. 农学学报, 2011 , 1(4) : 14 -21 . DOI: 10.11924/j.issn.2095-4050.2011-xb0404

Abstract

In order to establish the optimized RAPD-PCR experiment system for Mallotus oblongifolius (Miq.) Muell.-Arg., the single factor experiments were at first used to detect the suitable concentration ranges of the different influential factors, and then the orthogonal design was used to optimize RAPD-PCR amplification system of M. oblongifolius in 5 factors (Mg2+, dNTPs, primer, Taq polymerase, DNA template) at 4 levels, respectively. And then the data were analyzed by Soft Ware SAS. A optimal RAPD reaction system was finally established. Namely, 2.5 μL 10×PCR buffer, 2.5 mmol Mg2+, 0.2 mmol dNTPs, 1.5 U Taq polymerase, 0.48 μmol/L primers, and 80 ng DNA template were contained in 25 μL reaction solution. The PCR amplification program was that pre-denaturing at 94℃ for 4 min, then denaturing at 94℃ for 30 s, annealing at 38℃ for 45 s, extension at 72℃ for 120 s, for 45 cycles, at last extension at 72℃ for 10 min. The productions were stored at 16℃. The optimized RAPD-PCR reaction system was suitable for the study of relationship and genetic diversity of M. oblongifoliu in the different populations.

参考文献

李娟玲 刘国民 曹嵩晓 罗轶奇 .利用单因子和正交设计双重实验法优化鹧鸪茶RAPD-PCR反应体系.农学学报 ,2011,1(4): 14-21
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