Abstract: China is the fourth in the world in organic agriculture area certified , but overall level is relatively lower. The main problems: small size in organic unit, low industrialization level and added value is small; simply focus on product safety and hygiene quality, while ignoring the ecological harmony, theory and practice of environment friendly; modern biological controling technologies, biological fertilizer, weeding technologies and promotion lag, cannot satisfy the requirement of scale development of organic agriculture, the production cost is high; soil and water loss problem in organic agriculture in mountainous areas, soil and atmospheric pollution bring new security risks; domestic organic certification has not in line with international standards yet, lack of international competitiveness. The strategies: as an important part of the construction of ecological civilization education and publicity, organic agriculture; state of organic agriculture projects to focus on supporting the development of organic agriculture; characteristic scale base planning at the national level; improve the professional standard of organic food identification, professional qualifications, the establishment of credit system of organic agriculture, organic agriculture major; related institutions and production enterprises should strengthen cooperation, promote the integration of organic agriculture research and extension of organic agriculture industry chain; pay attention to the problem of soil and water conservation in organic agriculture, strengthen the prevention and control and early warning of regional organic agricultural soil and atmospheric pollution; develop organic agriculture standard system with international standards, feasible, and promote international organic certification accreditation, improve the international competitiveness of China organic products.